LECTURES
Class Notes
The link to the ongoing class notes can be found here.
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Videos
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| Date | Topic | Video | Extra Material |
|---|---|---|---|
| 9/5/24 | Welcome to CS 181! | slides | |
| 9/10/24 | Intro to Alignment | slides | |
| 9/12/24 | Global Alignment + Scoring Schemes | ||
| 9/17/24 | Intro to Local Alignment | Hannah's Notes | |
| 9/19/24 | More Smith-Waterman | Hannah's Notes | |
| 9/24/24 | Affine Gap Alignment | ||
| 9/26/24 | Alignment + Graph Theory | ||
| 10/1/24 | Graph Algorithms | ||
| 10/3/24 | Intro to DFAs | ||
| 10/8/24 | Regex and intro to KMP | regex slides | |
| 10/10/24 | KMP Algorithm | Hannah's Notes | |
| 10/15/24 | Failure Function | Hannah's Notes | |
| 10/17/24 | KMP + DFA Algorithms | ||
| 10/22/24 | Suffix Trees | Hannah's Notes | |
| 10/24/24 | More Suffix Trees and Some BW Transform | Hannah's Notes | |
| 10/29/24 | More BW and Regulatory Genomics | ||
| 10/31/24 | Midterm | ||
| 11/7/24 | UPGMA Intro | Hannah's Notes | |
| 11/12/24 | More Phylogeny | ||
| 11/14/24 | Neighboring-Joining Algorithm | Hannah's Notes | |
| 11/19/24 | Intro to HMMs |